Abstract: Chromosomes and plasmids are the major carriers of genetic material in microorganisms such as bacteria. Separating chromosomal and plasmid DNA from large datasets is important as plasmids ...

Many bacteria contain plasmids, but separating between contigs that originate on the plasmid and those that are part of the bacterial genome can be difficult. This is especially true in metagenomic ...

Hello if I want to find out from my metagenomic data whether each contig is the result of plasmid/chromosome/virus, do you have a recommended method? Can I directly use *aggregated_classification ...

Bacterial conjugation is an efficient and sophisticated mechanism of DNA transfer among bacteria. While mobilizable plasmids only encode a minimal MOB machinery that allows them to be transported by ...

Plasmids are major drivers of microbial evolution, enabling horizontal gene transfer (HGT) and facilitating adaptation through the dissemination of relevant functional genes and traits. However, ...

Abstract: Chromosomes and plasmids are the main sites of genetic information in microorganisms. Separately identifying plasmids and chromosomes is essential for further metagenomic analysis.

1 Department of Laboratory Medicine, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China 2 Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, State ...

実験室で作製された数千のプラスミドを解析したところ、その半数近くに設計上の深刻なエラーが見つかり、実験の再現性に疑問が生じている。 現代生物学における主力研究ツールの1つは、環状DNAプラスミドだ。実験室で作製されたプラスミドは、研究用 ...

Thank you so much for the tool, it’s really useful! I’ve been working with plasmids and their typing through relaxases for many years. Right now, I’m working with high-quality Nanopore assemblies and ...